YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PRA1D_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANQVITGIK ETAQSITGAA RPWGDFLDLS AFSFPSSIAD ATTRVTQNLT HFRINYSIIL  60
   61 SILLGLTLIT RPIAILAFIA VGLAWFFLYF AREEPLTIFG FTIDDGIVAV LLIGLSIGSL 120
  121 VTTGVWLRAL TTVGFGVLVL ILHAALRGTD DLVSDDLESP YGPMLSTSGG GNDGARGDYS 180
  181 GI

Type	Start	End	Confidence
Cytoplasmic	1	58	0.83
Transmembrane Helix	59	89	0.77
Non-Cytoplasmic	90	97	0.64
Transmembrane Helix	98	118	0.83
Cytoplasmic	119	124	0.43
Transmembrane Helix	125	146	0.78
Non-Cytoplasmic	147	182	0.58