YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MGP4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQQKFLHQR PIQNPFTNPF SSSPLSTSSI SNRPISLLSR NGLLLLLALL VILGVFLPWA  60
   61 GSPLFPSPNK LSPSQSKWRD YSLPQAVKFV AKNGTVIVCA VSYPYLPFLN NWLISVSRQK 120
  121 HQDQVLVIAE DYATLYKVNE KWPGHAVLIP PALDSQTAHK FGSQGFFNFT ARRPQHLLEI 180
  181 LELGYNVMYN DVDMVWLQDP FQYLEGKHDA YFMDDMTAIK PLDHSHDLPP PGKKGRTYIC 240
  241 SCMIFLRPTN GAKLLMKKWI EELETQPWSR AKKANDQPGF NWALNKTANQ VDMYLLSQAA 300
  301 FPTGGLYFKN KTWVKETKGK HAIIHNNYIV GFEKKIKRFR DFNLWLVDDH ASESPLGKLE 360
  361

Type	Start	End	Confidence
Cytoplasmic	1	41	0.89
Transmembrane Helix	42	62	0.88
Non-Cytoplasmic	63	360	0.92