YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PHYK1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATLPLSPI NHQLCRFGNN SLTTHRFCSP GFLISSPCFI GLTGMGSATQ LRARRSLISS  60
   61 AVATNSLLHD VGATVAVLGG AYALVLSFES LTKRNVIQQS LSRKLVHILS GLLFVLAWPI 120
  121 FSGSTEARYF AAFVPLVNGL RLVINGLSIS PNSMLIKSVT REGRAEELLK GPLFYVLALL 180
  181 FSAVFFWRES PIGMISLAMM CGGDGIADIM GRKFGSTKIP YNPRKSWAGS ISMFIFGFFI 240
  241 SIALLYYYSS LGYLHMNWET TLQRVAMVSM VATVVESLPI TDQLDDNISV PLATILAAYL 300
  301 SFGY

Type	Start	End	Confidence
Cytoplasmic	1	26	0.89
Transmembrane Helix	27	48	0.84
Non-Cytoplasmic	49	66	0.85
Transmembrane Helix	67	88	0.86
Cytoplasmic	89	104	0.84
Transmembrane Helix	105	122	0.95
Non-Cytoplasmic	123	128	0.81
Transmembrane Helix	129	149	0.85
Cytoplasmic	150	167	0.83
Transmembrane Helix	168	187	0.91
Non-Cytoplasmic	188	191	0.84
Transmembrane Helix	192	211	0.82
Cytoplasmic	212	226	0.78
Transmembrane Helix	227	248	0.92
Non-Cytoplasmic	249	304	0.71