YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CARA_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMATRTLGF VLPTSLSSQP SFDRRGGGFR VSVIRCSTSP LTFPTSGVVE KPWTSYNARL  60
   61 VLEDGSIWPA KSFGAPGTRI AELVFNTSLT GYQEILTDPS YAGQFVLMTN PQIGNTGVNP 120
  121 DDEESGQCFL TGLVIRNLSI STSNWRCTKT LADYLTERDI MGVYDLDTRA ITRRLREDGS 180
  181 LIGVLSTEQS KTDDELLQMS RSWDIVGIDL ISDVSCKSPY EWVDKTNAEW DFNTNSRDGK 240
  241 SYKVIAYDFG IKQNILRRLS SYGCQITVVP STFPAAEALK MNPDGILFSN GPGDPSAVPY 300
  301 AVETVKELLG KVPVYGICMG HQLLGQALGG KTFKMKFGHH GGNHPVRNNR TGQVEISAQN 360
  361 HNYAVDPASL PGGVEVTHVN LNDGSCAGLS FPEMNVMSLQ YHPEASPGPH DSDNAFREFI 420
  421 ELMKRSKQSS

Type	Start	End	Confidence
Signal Peptide	1	20	0.83
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	430	0.99