YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55167912, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDGYYSSKK TDDICDDVCG QDGSRAAKAF SRVRCVLRGF DFKTYIFFFT IVPIFIFGVY  60
   61 LHGQKLTYFL RPLWESPPKP FQTLPHYYHE NASMATLCSL HGWKHRESPR RVFDAVLFSN 120
  121 EVDMLTIRWK ELYPYITQFV ILESNSTFTG LPKPLVFNGN RAKFEFAEPR LSYGNIAGRF 180
  181 KKGENPFVEE AYQRIALDQL IRLAGIEEDD LLIMSDVDEI PSAHTINLLR WCDGYPPILH 240
  241 LQLKNYLYSF EYFVDNKSWR ASIHQYKPGK TRYAHFRQGN TLLADSGWHC SFCFRHISEF 300
  301 IFKMKAYSHN DRVRFSHYLN PKRIQDVICK GTDLFDMLPE EYTFREIIGK LGPIPRSYSA 360
  361 VHLPAHLIEK AESYKYLLPG NCIRESG

Type	Start	End	Confidence
Cytoplasmic	1	41	0.95
Transmembrane Helix	42	63	0.90
Non-Cytoplasmic	64	387	0.92