YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATL36_ARATH
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIFTRYHLP RVVSGVILPL FLFHLLPYVT CQQESVPTNS IRQTNLSADS IIAIVVLAIF  60
   61 ISLGMVSCCL HCIFYREEIG AAGQDVLHSR ARRGLEKEVI ESFPTFLYSE VKGLKIGKGG 120
  121 VECAICLSEF EDQETLRWMP PCSHTFHANC IDVWLSSWST CPVCRANLSL KPGESYPYLN 180
  181 MDVETGGVQK LPNERSLTGN SVTTRSRSTG LLSSWRMAEI FVPRSHSTGH SLVQQLGENL 240
  241 DRFTLQLPEE VQRQLVSLNL IRRSHIVLPQ AVSSRQGYRS GSVGSERGGF SQGRQTHRRA 300
  301 LSMSFSFSFQ TASVRSIHDM NDQAQAKDKY FGERSFERLM PEEKV

Type	Start	End	Confidence
Cytoplasmic	1	6	0.92
Transmembrane Helix	7	28	0.84
Non-Cytoplasmic	29	50	0.84
Transmembrane Helix	51	74	0.89
Cytoplasmic	75	345	0.89