YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TET8_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARCSNNLVG ILNFLVFLLS IPILAGGIWL SQKGSTECER FLDKPVIALG VFLMVVAIAG  60
   61 LIGSCCRVTW LLWVYLFVMF LLILLVFCIT VFAFVVTNKG AGEAIEGKGY KEYKLGDYST 120
  121 WLQKRVENGK NWNKIRSCLV ESKVCSKLEA KFVNVPVNSF YKEHLTALQS GCCKPSDECG 180
  181 FEYVNPTTWT KNTTGTHTNP DCQTWDNAKE KLCFDCQSCK AGLLDNVKSA WKKVAIVNIV 240
  241 FLVFLIIVYS VGCCAFRNNK RDDSYSRTYG YKP

Type	Start	End	Confidence
Cytoplasmic	1	7	0.49
Transmembrane Helix	8	30	0.91
Non-Cytoplasmic	31	44	0.46
Transmembrane Helix	45	66	0.89
Cytoplasmic	67	71	0.41
Transmembrane Helix	72	96	0.89
Non-Cytoplasmic	97	233	0.50
Transmembrane Helix	234	256	0.85
Cytoplasmic	257	273	0.48