YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2832680, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARTFILWLH GLGDSGPANE PIQTQFKSSE LSNASWLFPS APFNPVTCNN GAVMRSWFDV  60
   61 PELPFKVGSP IDESSVLEAV KNVHAIIDQE IAEGTNPENV FICGLSQGGA LTLASVLLYP 120
  121 KTLGGGAVLS GWVPFTSSII SQFPEEAKKV PHLCFLINTP ILWSHGTDDR MVLFEAGQAA 180
  181 LPFLKEAGVT CEFKAYPGLG HSISNKELKY IESWIKRRLK DILQNKTFFE RSISRENGEG 240
  241 MRTSRLKKPI VLLTIALLSS VFFFAFFFLN KSDVSSTSAL RNRDSMARTF ILWLHGLGDS 300
  301 GPANEPIKTL FRSQEFRNTK WLFPSAPPNP VSCNYGAVMP SWFDIPELPL TAGSPKDESS 360
  361 LLKAVKNVHA IIDKEIAGGI NPENVYICGF SQGGALTLAS VLLYPKTIGG GAVFSGWIPF 420
  421 NSSITNQFTE DAKKTPILWS HGIDDKTVLF EAGQAALPFL QQAGVTCEFK V

Type	Start	End	Confidence
Cytoplasmic	1	249	0.85
Transmembrane Helix	250	269	0.96
Non-Cytoplasmic	270	471	0.91