YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CHX4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.77
Transmembrane Helix	18	35	0.67
Non-Cytoplasmic	36	53	0.76
Transmembrane Helix	54	73	0.92
Cytoplasmic	74	82	0.60
Transmembrane Helix	83	98	0.53
Non-Cytoplasmic	99	115	0.56
Transmembrane Helix	116	135	0.89
Cytoplasmic	136	148	0.57
Transmembrane Helix	149	172	0.92
Non-Cytoplasmic	173	188	0.58
Transmembrane Helix	189	209	0.91
Cytoplasmic	210	220	0.55
Transmembrane Helix	221	243	0.77
Non-Cytoplasmic	244	270	0.69
Transmembrane Helix	271	293	0.85
Cytoplasmic	294	304	0.71
Transmembrane Helix	305	324	0.93
Non-Cytoplasmic	325	347	0.52
Transmembrane Helix	348	368	0.61
Cytoplasmic	369	385	0.58
Transmembrane Helix	386	409	0.85
Non-Cytoplasmic	410	415	0.60
Transmembrane Helix	416	438	0.78
Cytoplasmic	439	444	0.56
Transmembrane Helix	445	466	0.80
Non-Cytoplasmic	467	817	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFNGDRIPY LRDTWRDANM ICGILPINPS SSGLWPSPKL PDPQANIEFW NYMFPHVQII  60
   61 FLIVTILWQF FHFFLRRLGM IRFTSHMLTG ILLSKSFLKE NTPARKFLST EDYKETLFGL 120
  121 VGACSYMMFW FLMGVKMDLS LIRSTGRKAV AIGLSSVLLS ITVCALIFFL ILRDVGTKKG 180
  181 EPVMSFFEII FIYLIQCLSS FPVIGNLLFE LRLQNSELGR LAMSSAVISD FSTSILSAVL 240
  241 VFLKELKDDK SRLGSVFIGD VIVGNRPMKR AGTVVLFVCF AIYIFRPLMF FIIKRTPSGR 300
  301 PVKKFYIYAI IILVFGSAIL ADWCKQSIFI GPFILGLAVP HGPPLGSAIL QKFESVVFGT 360
  361 FLPFFVATSA EEIDTSILQS WIDLKSIVIL VSVSFIVKFA LTTLPAFLYG MPAKDCIALS 420
  421 LIMSFKGIFE FGAYGYAYQR GTIRPVTFTV LSLYILLNSA VIPPLLKRIY DPSRMYAGYE 480
  481 KRNMLHMKPN SELRILSCIY KTDDIRPMIN LLEATCPSRE NPVATYVLHL MELVGQANPV 540
  541 LISHRLQTRK SENMSYNSEN VVVSFEQFHN DFFGSVFVST YTALSVPKMM HGDICMLALN 600
  601 NTTSLIILPF HQTWSADGSA IVSDSLMIRQ LNKSVLDLSP CSVGIFVYRS SNGRRTIKET 660
  661 AANFSSYQVC MLFLGGKDDR EALSLAKRMA RDSRITITVV SLISSEQRAN QATDWDRMLD 720
  721 LELLRDVKSN VLAGADIVFS EEVVNDANQT SQLLKSIANE YDLFIVGREK GRKSVFTEGL 780
  781 EEWSEFEELG IIGDLLTSQD LNCQASVLVI QQQQQMI