YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7486119, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSTKGSVK KSSIKHSCNL AEVKRKLSKI SDHHSHVEYA YAFQRDNRER VDTRLSQILS  60
   61 RDALISAVDL LWDRSGFVSL KEGNFDYVDR DEVSSEKAKS QLSSTPQSRV RLLGVAEKMY 120
  121 SFDPYNRKSL LNQTDGSKSI CGSCKGIGFP FEARWKTLYS WMEGVLPSST RYHEEGAEIE 180
  181 KRENFEGCIL NPVSSKEELA SRNGDGCDCV FDAIGAKDQS TVIEPRSLLL ATVAESVVDT 240
  241 RVSRSNDVNY LFLLYKDRCV NNKGVNMISS KCSTDCDAEV SSSGNNLDED CLSIVENKQL 300
  301 LEKDRNDKET EVCLSSPETT TYAFAKQRHA FAGALAGISV SLCLHPLDTV KTMIQSCRLE 360
  361 EKSLCNTGRS IISERGFSGL YRGIASNIAS SAPISALYTF TYETVKGTLL PLFPKEYCSL 420
  421 AHCLAGGSAS IATSFIFTPS ERIKQQMQVS SHYRNCWTAL VGIIQKGGLL SLYAGWTAVL 480
  481 CRNIPHSIIK VRFAHTIIGL IPRLVMYMSQ GAIFFASYEF YKSVLSLAAA QPNTSALSGT 540
  541 KQKMEIALNR

Type	Start	End	Confidence
Non-Cytoplasmic	1	329	0.71
Transmembrane Helix	330	347	0.32
Cytoplasmic	348	378	0.54
Transmembrane Helix	379	400	0.60
Non-Cytoplasmic	401	417	0.75
Transmembrane Helix	418	438	0.79
Cytoplasmic	439	455	0.61
Transmembrane Helix	456	479	0.64
Non-Cytoplasmic	480	492	0.49
Transmembrane Helix	493	518	0.58
Cytoplasmic	519	550	0.48