YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZDH23_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYVVTPPQRS GFGSDCDLRV YQTWKGSNIF CLQGRFIFGP DVRSLGLTIS LIVAPVTIFC  60
   61 IFVASKLMDD FSDSWGVSII LVAVVFTIYD LILLMLTSGR DPGIIPRNSH PPEPEVVDGN 120
  121 TGSGTSQTPR LPRVKEVEVN GKVFKVKYCD TCMLYRPPRC SHCSICNNCV ERFDHHCPWV 180
  181 GQCIAQRNYR FFFMFVFSTT LLCVYVFAFC CVYIKKIKES EDISILKAML KTPASIALIL 240
  241 YTFISTFFVG GLTCFHLYLI STNQTTYENF RYSYDRHSNP HNKGVVDNFK EIFFSPIPPS 300
  301 KNNFRAMVPR ENPMPSRSVV GGFMSPNMGK ANDDIEMGRK GVWAMAEHGD GKDGNNNERF 360
  361 HVNDNELNEL SPDMGNIVNG DEQINRPNNH PRNANWEMSP EVMALSARRA

Type	Start	End	Confidence
Non-Cytoplasmic	1	43	0.60
Transmembrane Helix	44	65	0.92
Cytoplasmic	66	74	0.56
Transmembrane Helix	75	96	0.91
Non-Cytoplasmic	97	190	0.66
Transmembrane Helix	191	214	0.85
Cytoplasmic	215	235	0.66
Transmembrane Helix	236	260	0.90
Non-Cytoplasmic	261	410	0.72