YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42570499, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSQGMVSLT KSLCTMTPRV RLKNPNMLQK LKTGSCNFRF RNLRVLCTPK LSQWEPSPFI  60
   61 HASAEEAADI VLDKTANVFE SIVSESAEEE KVDMSAQQRT NSQVQVLKWP IWLLGPSVLL 120
  121 TSGMAPTLWL PLSSVFLGSN VVSLLSLIGL DCIFNLGATL FLLMADSCAR PKDPSQSCNS 180
  181 KPPFSYKFWN MFSLIIGFLV PMLLLFGSQS GLLASLQPQI PFLSSAVILF PYFILLAVQT 240
  241 LTEILTWHWQ SPVWLVTPVV YEAYRILQLM RGLTLSAEVN APVWVVHMLR GLVSWWVLIL 300
  301 GMQLMRVAWF AGFASRTTTG QQPQSVASK

Type	Start	End	Confidence
Cytoplasmic	1	108	0.96
Transmembrane Helix	109	130	0.90
Non-Cytoplasmic	131	141	0.77
Transmembrane Helix	142	165	0.86
Cytoplasmic	166	185	0.88
Transmembrane Helix	186	207	0.89
Non-Cytoplasmic	208	219	0.72
Transmembrane Helix	220	241	0.83
Cytoplasmic	242	291	0.51
Transmembrane Helix	292	313	0.84
Non-Cytoplasmic	314	329	0.44