YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SSL13_ARATH
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKKGQHGTY ESMMTHHPIL CIIALSVLFI AIDPFHMSPI GGREFKPVKH EVAPYKEVMG  60
   61 SWPRDNLSRL GNHGKLEFVD QVFGPESLEF DSLGRGPYTG LADGRVVRWM GEAIGWETFS 120
  121 VVTSKWSEEA CVRGVDSTTN KQWKHEKLCG RPLGLRFHKE TGNLYIADAY YGLLVVGPEG 180
  181 GIATPLATHV EGKPILFAND LDIHRNGSIF FTDTSKRYDR ANHFFILLEG ESTGRLLRYD 240
  241 PPTKTTHIVL EGLAFPNGIQ LSKDQSFLLF TETTNCRLVK YWLEGPKMGE VEVVADLPGF 300
  301 PDNVRINEEG QFWVAIDCCR TPAQEVLTNN PWIRSIYFRL PIPMKLLAKT MGMRMYTVIS 360
  361 RFDEEGKVLE VLEDRQGKVM KLWIGTVAHN HIATLPYPLT MNQ

Type	Start	End	Confidence
Cytoplasmic	1	13	0.85
Transmembrane Helix	14	37	0.83
Non-Cytoplasmic	38	403	0.91