YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7270225, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLHKTLFT QNPTTLDQLM MCHTGRDNSW KKLENIDEEG PSTVAREVRT ALPPETPTEM  60
   61 MEFLGRSWSI SALLPHVGNK TSPPITPRTG REMKHLYKSM IRGRTMGRRL KDQKEKKKQE 120
  121 TRTRNAEIHA AVSVAGVAAV VAATAASNAI AAAEDAVEST TVAAAMASAA ALIASHCIEI 180
  181 AGEIGAGYNQ IATAVSSATN ARTNGDIMAL TASAATGIIY CFLA

Type	Start	End	Confidence
Cytoplasmic	1	127	0.88
Transmembrane Helix	128	151	0.82
Non-Cytoplasmic	152	160	0.76
Transmembrane Helix	161	182	0.73
Cytoplasmic	183	202	0.70
Transmembrane Helix	203	223	0.52
Non-Cytoplasmic	224	224	0.56