YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GATL9_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLRFPMKSA VLAFAIFLVF IPLFSVGIRM IPGRLTAVSA TVGNGFDLGS FVEAPEYRNG  60
   61 KECVSQSLNR ENFVSSCDAS LVHVAMTLDS EYLRGSIAAV HSMLRHASCP ENVFFHLIAA 120
  121 EFDPASPRVL SQLVRSTFPS LNFKVYIFRE DTVINLISSS IRQALENPLN YARNYLGDIL 180
  181 DPCVDRVIYL DSDIIVVDDI TKLWNTSLTG SRIIGAPEYC HANFTKYFTS GFWSDPALPG 240
  241 FFSGRKPCYF NTGVMVMDLV RWREGNYREK LETWMQIQKK KRIYDLGSLP PFLLVFAGNV 300
  301 EAIDHRWNQH GLGGDNVRGS CRSLHKGPVS LLHWSGKGKP WVRLDEKRPC PLDHLWEPYD 360
  361 LYEHKIERAK DQSLFGFSSL SELTEDSSFF

Type	Start	End	Confidence
Signal Peptide	1	25	0.76
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	390	0.99