YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5730134, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMVANSFDLW QKDVFFSAAE EVQESADIME SAYRLWFKEK RDGRVSVESD ELCKELQAAL  60
   61 STAKWQLEEF ERAVSLSHGN CRDDTTLTRH KQFVTAIENQ IYQVESTLLE SLSENGKQPL 120
  121 RWVDLNKEER DDLAMFLSGS SQTSESLNSD SINLRDSSTS SVAENPRGIN GRREGRCYGD 180
  181 SPDCVIDIDD IGSPESADKK GGTRRTWSSP NVPNISALRI NVPVNAKEEE REKFLSHIED 240
  241 TPKEKGAKPM FWLQRCRDYN QLFDRVKVYQ RRFRVPLSRP IKLILSLTLI LILLCFFTDS 300
  301 CVLGYTLVRC YMIQHPSREG GEIKRLCQDS NEGQSLIYYS LLILREHIGT CKFVRSICKT 360
  361

Type	Start	End	Confidence
Non-Cytoplasmic	1	282	0.67
Transmembrane Helix	283	308	0.82
Cytoplasmic	309	360	0.62