YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2245118, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.67
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALFSPPISS SSLQNPNFIP KFSFSLLSSN RFSLLSVTRA SSDSGSTSPT AAVSVEAPEP  60
   61 VEVIVKEPPQ STPAVKKEET ATAKNVAVEG EEMKTTESVV KFQDARWING TWDLKQFEKD 120
  121 GKTDWDSVIV AEAKRRKWLE ENPETTSNDE PVLFDTSIIP WWAWIKRYHL PEAELLNGRA 180
  181 AMIGFFMAYF VDSLTGVGLV DQMGNFFCKT LLFVAVAGVL FIRKNEDVDK LKNLFDETTL 240
  241 YDKQWQAAWK NDDDESLGSK KKLLDRYGFR KLDSEQREFA DGDFVRGKPE LIRNIYKRTR 300
  301 AQILNTKEGR ELLKQVMEMR KQRREKMKKE ITKAKELADR LHHVHIWNIQ

Type	Start	End	Confidence
Cytoplasmic	1	174	0.64
Transmembrane Helix	175	194	0.60
Non-Cytoplasmic	195	205	0.74
Transmembrane Helix	206	222	0.62
Cytoplasmic	223	350	0.63