YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15231678, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKDFPIPPV VFPTSGSSPA TANVQQRRVP TAPYQPPRQS SASSSIPFIP FEIGSAAVSM  60
   61 PAGPFDGTIA SSASFGRGVS ASFEDEEPLL DELGIHPDQI WKKTRSILNP FRINQTVHKD 120
  121 SDLSGPIFLY LALCLFQLLA GKIQFGVILG WVVVSSIFLY IVFNMLAGRN GNLNLHTCTS 180
  181 LVGYSLLPVV ILSAVSLFVP QGAGPVRFVL GAAFVLWATR ACSNLVVSLA DGGEEHRGLI 240
  241 SYACFLIYTL FSLLVIF

Type	Start	End	Confidence
Cytoplasmic	1	121	0.80
Transmembrane Helix	122	140	0.71
Non-Cytoplasmic	141	146	0.65
Transmembrane Helix	147	167	0.92
Cytoplasmic	168	176	0.72
Transmembrane Helix	177	199	0.87
Non-Cytoplasmic	200	207	0.62
Transmembrane Helix	208	228	0.83
Cytoplasmic	229	237	0.73
Transmembrane Helix	238	256	0.94
Non-Cytoplasmic	257	257	0.82