YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15234049, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARRRRSSAA ESLKRRNDGY ESLCQVVQQD SDRRLITIFV IFFIVIPAVS IAVYKVKFAD  60
   61 RVIQTESSIR QKGIVKTDIN FQEILTEHSK ASENSTRHYD YPVLAYITPW NSKGYDMAKI 120
  121 FNSKFTHLSP VWYDLKSQGS GLVLEGRHNA DKGWIQELRS RGNALILPRV VLEAIPGEML 180
  181 NKKKLREKAI SLIVTECKEM EYNGIVLESW SRWAAYGVLH DPDLRKMALK FVKQLGDALH 240
  241 STSSPRNNQQ HMQFMYVVGP PRSEKLQMYD FGPEDLQFLK DSVDGFSLMT YDFSNPQNPG 300
  301 PNAPVKWIDL TLKLLLGSSN NIDSNIARKV LLGINFYGND FVISGDSGGG GAITGRDYLA 360
  361 LLQKHKPTFR WDKESGEHLF MYRDDKNIKH AVFYPTLMSI LLRLENARLW GIGISIWEIG 420
  421 QGLDYFFDLL

Type	Start	End	Confidence
Cytoplasmic	1	34	0.83
Transmembrane Helix	35	56	0.83
Non-Cytoplasmic	57	430	0.91