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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|11358244, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAKWRALQH RHRYTYSAVL FPSSFTASLS QSSLSQSCPK FYSNIEELVS LNSIYAQVNH  60
   61 AKKVVASFGE FLAKANENEG GERETVSVRE AIRFYLEILF MENSLPLHKT LVSALAKTTK 120
  121 FHSVISSCFK ELCDEYGGFE DGGNRFCVSR VALSVMGMPK LGYLVDIIED CALLVGYDIV 180
  181 SGLNGIVLDT EACDRPPPTV MEQCQEALSC SYYLFQRFPL KFKGLVGEDA SFMESVLAVQ 240
  241 VSILKSLAFS RDCYVAAGVS FCAALQVCLK DEELGLFIAQ CIFCWSSVVR LADIVSKIPF 300
  301 AGDICSEICS FSSLSRLCLI RGILTTVSRG ILVSSFARLS NSDCDHKTIL YDGILLELCD 360
  361 LCENPIDSHL NFHVLTVMQI CMQQIKTSML TDLSEGYDPM PDSMAARVLR IIWNNLEDPL 420
  421 SQTVKQVHLM FDLLLDIQTT VHQTDDKVGM RESLLKIVNY LLRLGSRCKG RYVPLASLTR 480
  481 RLGAKTLMDM SPNLLFEMAN AYIDDDVCYA VTSFIKCFLE LLRDESWGSE GVDQGYARYR 540
  541 EHCLPPFLYG LASGKSKLRS NLNTYAVQVL LELDVDSIFL LLAYISIGPS EEETKLNYTE 600
  601 LSNMSMELTV EQKVVVLVSL LKVCRTLAFL EGDIEQKRST DAFAVVQIKG IELKIPIEWL 660
  661 KMALTHVDES VRVDAAETLF LNPKTSSLPS PLELYLMKEA VPLNMRSSST GFQMKWTSLF 720
  721 RKFFLRVRTS LEKQYKLGSL QPLKSDKNAV LRAESLFKFM RWLSSFLYLS CYPSAPYRRK 780
  781 IMATELIQIM IEVWPVVASK DPTSHQGHLY PYCDIVTSHD STLLLVGSIV DSWDRLRENS 840
  841 FRILLHFPTP FTGISSEDMV QIIIPWAKQL VCSPRVRESD AECENIDCRN QNSKPKYPVV 900
  901 EYIKSLIQWL DASVTEGERD LSEACKNSFV HGVLLALRYT FEELDWNSNA VLSISEMRKE 960
  961 LEKLLKLVTR ITTLALWVVS ADALCLPEDM DDIIDDDSFF SNVQDDSAAV LSEEHTSTYP1020
 1021 KHVHETVQSE QVVMVGCWLA MKEVSLLLGT IIRKIPLPTS SLRPLENGDT ASSVPNDLVI1080
 1081 GNSESLLDLK QLEKIGDHFL EVLLKMKHNG AIDKTRAGFT ALCHRLLCSN DPRLCKLTES1140
 1141 WMEQLMERTV AKGQTVDDVL RRSAGIPAAF IALFLSEPEG SPKKLLPRAL RWLIGLAEKP1200
 1201 LMEPLEQKGS KHMVEEINSS DMHSNEKLSK VRDEGVVPTV HAFNVLKATF NDTNLSTDTS1260
 1261 GFSAEAMIVS IRSFSSPYWE VRNSATLAYT ALVRRMIGFL NVQKRGSTRR ALTGLEFFHR1320
 1321 YPLLHPFIYS ELKAATDLLD TSGSSDSNLA NLVHPSLWPI LILLSRLKPS PIASESGDDL1380
 1381 DPFVFMPFIM KCSTQSNLRV RVLASRALVG LVSNEKLQSV LLRIASTLPS NGAQGGSFNY1440
 1441 LHGILLQLGN LLDTNCRDLA DNSKKDQIIG KLINVLANCS WLASPLTCPC PILCTSFLRV1500
 1501 LDHMRVIEWT CSESKNLRDI YKLHLDLSTN CLDADASYGF SYYDPSIAEL REQAAVSYFG1560
 1561 CVFQPSDEAA EVFQITQRPN LQSQKVPEAL DFPHLNERLL RCISDQSYEV RLATLKWFLR1620
 1621 FLKSEDSSFS ESSSIWNWAK NGLQVILLEL LDKEKNHKCE NYILRILFQW NLLMFKKSCN1680
 1681 KESVEGIYVG SLNYDSVFHL WGRLTSLYES TRRAKTRGTL MCCLAICVKH LTGLFIHKNE1740
 1741 SEKEEEPRWS CITDCVSYFV NLIKQKSLPS EQVNVRHASA EAIIASGILE QAKLIGPLVS1800
 1801 NHQISSETTP SKFQKACDVY AYQILEMWFT CIKLLEDEDD VIRSKLATDV QKCFFTAVEV1860
 1861 PTQVDKVLEL SFNHLSSILG HWNEYSQYLS RWVFNTADYT SPPKGGSDLV RRVFDKEIDN1920
 1921 HHEEKLLILQ FCCYHLQKLP NRDFSLAQLL DWRSKFHNQL LAFAKDHVSK QRESWVGGVG1980
 1981 NHKDVFLPLY GNLLGLYVFS DCIFRFSTDS NDKKTLFSDI IELGEALKPF LRNPLVSNMF2040
 2041 RVVVRLHEKL LNDSLMDLST VLSGEIWEAE PALLLSAKVT GGTPNKLSKM YVLSPLYYGN2100
 2101 IYAFITDVAF GILGFQYFKL LDIEDLVAPF LSMIWLVRKV KPYLPKNLV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle