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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|7268543, gi|1...
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRGLVNFTG LSTRLLNICV DSLCKFRKLE KAESLIIDGI RLGVDPDVVT YNTLISGYCR  60
   61 FVGIEEAYAV TRRMRDAGIR PDVATYNSLI AGAARRLMLD HVLYLFDEML EWGIYPDLWS 120
  121 YNTLMCCYFK LGKHEEAFRV LYKDLQLAGL NPDNALELFK EMQSRFKPEL MTYNILINGL 180
  181 CKSRRVGTAK WMLTELKKSG YTPNAVTYTT ILKLYFKTRR IRRGLQLFLE MKREGYTYDG 240
  241 YAYFAVVSAL IKTGRTKEAY EYMQELVRKD GNLDAVDDLL GEIERRGMKA DEYTHTIIVN 300
  301 GLLRTGQTRR AEEHFVSMGE MGIGLNLVTC NCLVDGLCKA GHVDRAMRYF ESMEVKDEYT 360
  361 YTSVVHNLCK DMRFVCASKL LLSCYNKGIK IPTSARRAVL SGLRMSGCYG EARKAKAEMK 420
  421 LTLVIMGRVR LVTPSSSESE DERVTIIREA DMNREEVAEE NKFEDENCEQ ESPENLNEPE 480
  481 EENISEEGDN VEPMQSQGME ENPEEEEKEG EEEEESEGNQ NPNFFSIQPK TYQRTWIWRD 540
  541 MRKIRRRRRF VVLFVGGSSS SEKREGEKKS FREKKGEEGN KERERKFSNS PVKLELKSPA 600
  601 KSELKSPAAK SEKITSEVVG ENRGSNDRSI RMGLSWDRLV VVVGTDSFCD CQKRGQSLSF 660
  661 RASVSSYRVA LMLITCLCIL AVDFTIFPRR YAKTETYGTS LMDLGVGSFV LANAVVSRQA 720
  721 RDVSSGNWIT GIKATAPLLL LGFIRLVTTS GVDYQVHVTE YGVHWNFFFT LAAISILTSF 780
  781 VNIPAKYCGL LGFAVLAGYQ TWLLSGLNTY LLSDERGTDI ISKNKEGVYS ILGKILTWLL 840
  841 GHVPSWRSLR IVTILFDNYV ERISRRTALG IFMLSSYIPL NKLSSLEEAI DQNLLATFLL 900
  901 SDPNPSAWNQ YINPRDCTQG LCSTFCPQWC TYINFSPPPI SYEQFLNDGV ASNPNLSPLV 960
  961 IAIFGIFATA FLLAAYYTLV SKYCANDTTN EAASESGRSD IILDVNSPER GDQDDPFALE1020
 1021 SSTAGLDDTL IKKIGFFKLK KHQNGFKING TDCSICLGEF NEDESLRLLP KCNHTFHVVC1080
 1081 IDRWLKSHSN CPLCRAKIIV PTTQQPEHHV VVMNLDRFTS NVGSAEGNVV VDDHREEVSV1140
 1141 SISSHHPSWF SAADIVLRIS RDGEEEEGNY DLENGNREKL VDLKRSFSSG GLVLGTQGRT1200
 1201 RRSLNICP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle