YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PUP9_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.73
Transmembrane Helix	31	50	0.80
Cytoplasmic	51	70	0.90
Transmembrane Helix	71	90	0.96
Non-Cytoplasmic	91	96	0.68
Transmembrane Helix	97	118	0.77
Cytoplasmic	119	124	0.69
Transmembrane Helix	125	143	0.86
Non-Cytoplasmic	144	157	0.65
Transmembrane Helix	158	183	0.80
Cytoplasmic	184	194	0.66
Transmembrane Helix	195	217	0.88
Non-Cytoplasmic	218	236	0.64
Transmembrane Helix	237	260	0.77
Cytoplasmic	261	264	0.48
Transmembrane Helix	265	287	0.85
Non-Cytoplasmic	288	291	0.51
Transmembrane Helix	292	314	0.74
Cytoplasmic	315	344	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGDQEVQVI GQSVATILGR LYYENGGNSK WLATVVQLVG FPILLPYHLL SVKTHTTTQR  60
   61 DGKLTSLRNR ALVYIVLGLL VGAACYLYSI GLLYLPVSTL SLICASQLAF TAFFSYLLNS 120
  121 QKLTPIILNS LFLLTISSTL LAFNNEESDS KKVTKGEYVK GFVCTVGASA GFGLLLSLQQ 180
  181 LAFRKVLKKQ TFSEVINMII YMSLVASCVS VVGLFASSEW KTLSSEMENY KLGKVSYVMN 240
  241 LVWTAVTWQV FSIGCTGLIF ELSSLFSNAI SALGLPVVPI LAVIIFHDKM NGLKVISMIL 300
  301 AIWGFVSYVY QQYLDETNLK KSNEIPTTES PDRPEAEGSS EQSK