YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25402805, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATEHITRTG DEYNVELLPS DDDAPPLESS WRLNLDAFQL PSSTGGRHDG RTRFSRYFRT  60
   61 PRKERRVSEY YKKQERLLEG FNEMETIHEN GFASGVPTEE EMKKLAKSER LAVHISNATN 120
  121 LVLFVAKVYA SMESRSMAVI ASTLDSLLDL LSGFILWFTA NAMRKPNQFH YPIGKRRMQP 180
  181 VGIIVFASVM ATLGLQVLLE SGRQLVAKSG IHMNSTEEKW MIGIMVSVTI VKFLLMLYCR 240
  241 GFQNEIVRAY AQDHLFDVVT NSIGLATAVL AVKFYWWIDP TGAILIALYT IATWARTVLE 300
  301 NVHSLIGRSA PPDFLAKLTF LIWNHHEQIK HIDTVRAYTF GSHYFVEVDI VLPEDMRLQE 360
  361 AHNIGETLQE KLEQLAEVER AFVHIDFEFT HRPEHKCN

Type	Start	End	Confidence
Cytoplasmic	1	110	0.96
Transmembrane Helix	111	130	0.89
Non-Cytoplasmic	131	137	0.81
Transmembrane Helix	138	160	0.91
Cytoplasmic	161	179	0.90
Transmembrane Helix	180	199	0.96
Non-Cytoplasmic	200	219	0.91
Transmembrane Helix	220	239	0.95
Cytoplasmic	240	253	0.81
Transmembrane Helix	254	276	0.76
Non-Cytoplasmic	277	280	0.60
Transmembrane Helix	281	299	0.82
Cytoplasmic	300	398	0.86