YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GAE6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLSATADTS KTVKLERYNS YLRKIHSTKV LNASSKVLFR ATLLVALVLV LIFAINYPPL  60
   61 SDSRAAAAHH LHRRSFLSTG LFSSSSSSSS IGGAAWEKRV RQSSTAKRPH GLSVLVTGAA 120
  121 GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK 180
  181 LFDVVPFTHI LHLAAQAGVR YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS 240
  241 VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP 300
  301 DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR 360
  361 GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM PRNGDVPYTH ANVSLAYKDF 420
  421 GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA

Type	Start	End	Confidence
Cytoplasmic	1	36	0.87
Transmembrane Helix	37	57	0.90
Non-Cytoplasmic	58	75	0.80
Transmembrane Helix	76	96	0.79
Cytoplasmic	97	109	0.68
Transmembrane Helix	110	130	0.67
Non-Cytoplasmic	131	460	0.88