YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7486029, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEQEMALAK AADAMVHSIQ CSVSIDAKKE KHQEYENECR EKYAVPEVKS KDVDLDKEKD  60
   61 KKEAAESAAR EGLEAGVVII DGSHKPEVLE NEKSVEEVTL LSHQRKINVL YELLSACLSD 120
  121 KHHEDKKCKR CRKGYDARHR VALRLLATWF NIEWIKVEAI ETMVACSAMA IQKSAEMKGE 180
  181 DNLTPTTSWA KWKRGGIIGA AAITGGTLMA ITGGLAAPAI AAGFGALAPT LGTIIPVIGA 240
  241 GGFAAAASAA GTVAGSVAVA ASFGAAGAGL TGTKMARRIG DLDEFEFKAI GENHNQGRLA 300
  301 VEVLVAGVVF EEEDFVKPWE GLTSNLERYT LQWESKNLIL VSTAIQDWLT SRLAMELMKQ 360
  361 GAMHTVLASL LMALAWPATI LVAADFIDSK WSIAIDRSDK AGRLLAEVLQ KGLQGNRYRF 420
  421 HDCCNEVNII SIFKSYMVAG RFINVYATND WTLGIAFRAS LISQGLAGIQ PICIPGIENV 480
  481 DVTDMVEGHS SYLWKTQQIL ERLEIDTYYP VFRDTL

Type	Start	End	Confidence
Cytoplasmic	1	196	0.93
Transmembrane Helix	197	222	0.86
Non-Cytoplasmic	223	242	0.63
Transmembrane Helix	243	270	0.82
Cytoplasmic	271	361	0.92
Transmembrane Helix	362	384	0.88
Non-Cytoplasmic	385	516	0.81