YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CHLM_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFAPSLLSS SSSVSQFLPR FPNATRFNVT PRSRAATVVA ASVTDLAGVD STTIAVLGGG  60
   61 SVAALAAMVS LTDPERRRKL QAEEVGGGDK EVVREYFNST GFERWRKIYG ETDEVNRVQK 120
  121 DIRLGHAKTV ENTMLMLTED RSLAGVTVCD AGCGTGLLSI PLAKEGAIVS ASDISAAMVA 180
  181 EAEMKAKAQL PSENLPKFEV NDLESLTGKY DTVVCLDVLI HYPQNKADGM IAHLASLAEK 240
  241 RVILSFAPKT FYYDILKRIG ELFPGPSKAT RAYLHSEADV ERALGKVGWK ISKRGLTTTQ 300
  301 FYFSRLIEAV PM

Type	Start	End	Confidence
Signal Peptide	1	15	0.58
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	312	0.83