YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZCIS_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVYHLLLSS PPSLLLLPPS PRRPNLTLIR RIPAHPRLGN STSLLSSSSP VIRKILVRST  60
   61 LREDQPIASD SESSPTLLIG EDSAAFELGK QKLVSWVYFG VVLGVVLFIL NVVWIDNSTG 120
  121 FGKSFIDAVS NISGSPEVAM LMLILIFAIV HSGLASLRDI GEKLIGERAF RVLFAGISLP 180
  181 LAMSTIVYFI NHRYDGSQLW QLQGVPGVHE AIWVANFVSF FFLYPSTFNL LEVAAVDKPK 240
  241 MHLWETGIMR ITRHPQMVGQ IVWCLAHTLW IGNTVAASAS LGLIAHHLFG AWNGDRRLAK 300
  301 RYGEDFESIK KRTSVIPFAA IFEGRQVLPE DYYKEFVRLP YLAITALTVG AYFAHPLMQG 360
  361 ASFRLHW

Type	Start	End	Confidence
Cytoplasmic	1	93	0.99
Transmembrane Helix	94	115	0.94
Non-Cytoplasmic	116	137	0.87
Transmembrane Helix	138	157	0.90
Cytoplasmic	158	169	0.88
Transmembrane Helix	170	190	0.96
Non-Cytoplasmic	191	210	0.91
Transmembrane Helix	211	231	0.88
Cytoplasmic	232	258	0.82
Transmembrane Helix	259	285	0.79
Non-Cytoplasmic	286	336	0.73
Transmembrane Helix	337	358	0.83
Cytoplasmic	359	367	0.64