YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	IX14H_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLSVFRLSY WNRRGSSFRS SPSLDPSFDG KSPSSVFWFV IHGLCCLISL ILGFRFSHLV  60
   61 LFFLFSTSVT NLYTTPFLFA GNGGVSQLLR LKPLETATNS TVKKNSRVVV GRHGIRIRPW 120
  121 PHPNPIEVLR AHQLLVRVQK EQKSMYGVRS PRTVIVVTPT YVRTFQALHL TGVMHSLMLV 180
  181 PYDLVWIVVE AGGITNETAS FIAKSGLKTI HLGFDQKMPN TWEDRHKLET KMRLHALRVV 240
  241 REKKLDGIVM FADDSNMHSM ELFDEIQTVK WFGALSVGIL AHSGNADELS SILKNEQGKN 300
  301 KEKPSMPIQG PSCNSSEKLV GWHIFNTQPY AKKTAVYIDE KAPVMPSKME WSGFVLNSRL 360
  361 LWKESLDDKP AWVKDLSLLD DGYAEIESPL SLVKDPSMVE PLGSCGRRVL LWWLRVEARA 420
  421 DSKFPPGWII KSPLEITVPS KRTPWPDSSS ELPAAAIKEA KSNSKPRVSK SKSYKEKQEP 480
  481 KAFDGVKVSA TS

Type	Start	End	Confidence
Cytoplasmic	1	35	0.60
Transmembrane Helix	36	58	0.85
Non-Cytoplasmic	59	492	0.82