YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPPD_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKILERSME GSGTWQGLVL VGIVTWICAS SYLKFTHKFR SLLQPWVARQ VVGGVPLILR  60
   61 IQKCQNGVLD AFFSGLSCVV SVPFYTAFLP LLFWSGHGRL ARQMTLLIAF CDYLGNCIKD 120
  121 VVSAPRPSCP PVRRITATKD EEDNAMEYGL PSSHTLNTVC LSGYLLHYVL SSLEYESVSI 180
  181 QYYGFALACL LVALIAFGRV YLGMHSVVDI VSGLAIGVLI LGLWLTVNEK LDDFITSKQN 240
  241 VSSFWTALSF LLLFAYPTPE HPTPSYEYHT AFNGVTLGIV TGVQQTYSQF HHEAAPRIFS 300
  301 PELPISSYLG RVMVGIPTIL LVKFCSKSLA KWTLPMVSNA LGIPIRSSMY IPKLKGYASG 360
  361 KKTDEPKNSV GYLQKLCEFL SHDSFDIDTG IRFFQYAGLA WSVVDLVPSL FSYVNL

Type	Start	End	Confidence
Cytoplasmic	1	12	0.78
Transmembrane Helix	13	35	0.88
Non-Cytoplasmic	36	70	0.64
Transmembrane Helix	71	94	0.86
Cytoplasmic	95	179	0.67
Transmembrane Helix	180	201	0.90
Non-Cytoplasmic	202	206	0.70
Transmembrane Helix	207	227	0.93
Cytoplasmic	228	240	0.76
Transmembrane Helix	241	258	0.89
Non-Cytoplasmic	259	306	0.67
Transmembrane Helix	307	326	0.65
Cytoplasmic	327	416	0.65