YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25407968, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.69
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMRVETALA ILLVLISIQQ CYGDRDQWVC LCPANGFPVI AIGGSNSSCF TSCNCSAGAT  60
   61 KSSKKQYLSR KLVIVILLFC GVLISLAFLA SMICYICRKD KFSGQTPSVS SDRESSWHSS 120
  121 ANLINRKSSV SQSKISISSS VAGCFFQNAS LFCVSKPETI HGAIFQFSYT ELEQATNKFS 180
  181 SNSVIGHGGS SCVYRGQLKD GKTAAIKRLN TPKGDDTDTL FSTEVELLSR LHHYHVVPLI 240
  241 GYCSEFHGKH AERLLVFEYM SYGSLRDCLD GELGEKMTWN IRISVALGAA RGLEYLHEAA 300
  301 APRILHRDVK STNILLDENW HAKITDLGMA KCLSSDGLQS GSSSPTTGLQ GTFGYFAPEY 360
  361 AIAGCASQMS DVFSFGVVLL ELITGRKPIQ KPSNNKGEES LVIWAVPRLQ DSKRVIEELP 420
  421 DPRLNGKFAE EEMQIMAYLA KECLLLDPES RPTMREVVQI LSTITPDTSS RRRNFPINYL 480
  481 FQVCFT

Type	Start	End	Confidence
Signal Peptide	1	23	0.90
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	38	0.89
Transmembrane Helix	39	58	0.39
Cytoplasmic	59	71	0.43
Transmembrane Helix	72	96	0.71
Non-Cytoplasmic	97	486	0.76