YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PR1A1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDWGNVTVDD LFDALREVDW SSPPRPPSEF FSRFTVPKSV PKWDSRLKCN LYYYRTNYFI  60
   61 MIVVILGLGV LTRPLAIFAA LLTALSLAFL NDSFAGSFSE KATRTVRRFS PQLAAKMRPP 120
  121 LTPVTRGRPS SKRAIHVCGQ PRWVFVLTCS LVSFALWYIS SGLLRVSVAL LIAHLATILH 180
  181 ASLRTPNLKA RFNTFREEFR AVWRNYSEI

Type	Start	End	Confidence
Cytoplasmic	1	50	0.98
Transmembrane Helix	51	71	0.90
Non-Cytoplasmic	72	75	0.77
Transmembrane Helix	76	98	0.87
Cytoplasmic	99	138	0.93
Transmembrane Helix	139	159	0.86
Non-Cytoplasmic	160	165	0.64
Transmembrane Helix	166	183	0.88
Cytoplasmic	184	209	0.87