YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CSLC4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPNSVAVTM EKPDNFSLLE INGSDPSSFP DKRKSISPKQ FSWFLLLKAH RLISCLSWLV  60
   61 SSVKKRIAFS AKNINEEEDP KSRGKQMYRF IKACLVISII ALSIEIVAHF KKWNLDLINR 120
  121 PSWEVYGLVE WSYMAWLSFR SDYIAPLVIS LSRFCTVLFL IQSLDRLVLC LGCFWIKFKK 180
  181 IEPKLTEESI DLEDPSSFPM VLIQIPMCNE REVYEQSIGA ASQLDWPKDR ILIQVLDDSD 240
  241 DPNLQLLIKE EVSVWAEKGV NIIYRHRLIR TGYKAGNLKS AMTCDYVKDY EFVTIFDADF 300
  301 TPNPDFLKKT VPHFKGNPEL GLVQARWSFV NKDENLLTRL QNINLCFHFE VEQQVNGVFL 360
  361 NFFGFNGTAG VWRIKALEES GGWLERTTVE DMDIAVRAHL NGWKFIYLND VEVTCELPES 420
  421 YEAYKKQQHR WHSGPMQLFR LCLPSIIKSK ISVWKKANLI FLFFLLRKLI LPFYSFTLFC 480
  481 IILPLTMFIP EAELPLWIIC YVPIFISLLN ILPSPKSFPF LVPYLLFENT MSITKFNAMI 540
  541 SGLFQFGSAY EWVVTKKTGR SSESDLLAFA EKEEKLHRRN SESGLELLSK LKEQETNLVG 600
  601 QETVKKSLGG LMRPKNKKKT NMVFKKELGL AFLLLTAAAR SFLSAHGLHF YFLLFQGLSF 660
  661 LVVGLDLIGE QIS

Type	Start	End	Confidence
Cytoplasmic	1	89	0.91
Transmembrane Helix	90	109	0.92
Non-Cytoplasmic	110	142	0.89
Transmembrane Helix	143	161	0.73
Cytoplasmic	162	463	0.85
Transmembrane Helix	464	488	0.82
Non-Cytoplasmic	489	493	0.71
Transmembrane Helix	494	513	0.88
Cytoplasmic	514	621	0.90
Transmembrane Helix	622	643	0.78
Non-Cytoplasmic	644	647	0.68
Transmembrane Helix	648	669	0.82
Cytoplasmic	670	673	0.75