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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|7406454, gi|1...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.40
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEETTDNTGT ISSQKNVAAS GHNHHHRYKY ISNYGVGRRF LFFASCFGFY AFVAATYAWF  60
   61 VFPPHIGRTD HVSSSSLGCR EDNEGSWSIG VFYGDSPFSL KPIETRNVWR NESGAWPVTN 120
  121 PVITCASFTN SGLPSNFLAD PFLYVQGDTL YLFFETKSPI TMQGDIGAAK SIDKGATWEP 180
  181 LGIALDEAWH LSFPFVFNYN GEIYMMPESN EIGQLNLYRA VNFPLSWKLE KVILKKPLVD 240
  241 STIVHHEGIY WLIGSDHTGF GAKKNGQLEI WYSSSPLGTW KPHKKNPIYN GKRSIGARNG 300
  301 GRAFLYDGSL YRVGQDCGEN YGKRIRVSKI EVLSKEEYRE VEVPFSLEAS RKGKNSWNGV 360
  361 RQHHFDVKQL SSGEFIGLVD GDRVTSGDLF HRVILGYASL AAAISVVILL GFLLGVVNCI 420
  421 VPSTWCMNYY AGKRTDALLN LETAGLFSEK LRRIGSRLNR VPPFLRGFVK PNSSMGKFTL 480
  481 GVIVILGLLL TCVGVRYIYG GSGAVEPYPF KGHLSQFTLA TMTYDARLWN LKMYVKRYSR 540
  541 CPSVKEIVVI WNKGPPPDLS ELDSAVPVRI RVQKQNSLNN RFEIDPLIKT RAVLELDDDI 600
  601 MMPCDDIEKG FRVWREHPER LVGFYPRFVD QTMTYSAEKF ARSHKGYNMI LTGAAFMDVR 660
  661 FAFDMYQSDK AKLGRVFVDE QFNCEDILLN FLYANASGSG KAVEYVRPSL VTIDTSKFSG 720
  721 VAISGNTNQH YRKRSKCLRR FSDLYGSLVD RRWEFGGRKD GWDL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle