YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60543339, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWNQKHDLES AQTPLYPMMS ESPELRWSFI RKVYSIISIQ LLVTIAVAAT VVKVHSISVF  60
   61 FTTTTAGFAL YILLILTPLI VMCPLYYYHQ KHPVNYLLLG IFTVALAFAV GLTCAFTSGK 120
  121 VILESVILTA VVVISLTLYT FWAAKRGHDF NFLGPFLFGA VIVLMVFSFI QILFPLGKIS 180
  181 VMIYGCLASI IFCGYIVYDT DNLIKRHSYD EYIWAAVSLY LDVINLFLSL LTLLRAVDS

Type	Start	End	Confidence
Cytoplasmic	1	32	0.95
Transmembrane Helix	33	54	0.88
Non-Cytoplasmic	55	66	0.69
Transmembrane Helix	67	88	0.91
Cytoplasmic	89	95	0.82
Transmembrane Helix	96	116	0.95
Non-Cytoplasmic	117	121	0.77
Transmembrane Helix	122	143	0.91
Cytoplasmic	144	151	0.85
Transmembrane Helix	152	173	0.94
Non-Cytoplasmic	174	179	0.78
Transmembrane Helix	180	198	0.95
Cytoplasmic	199	211	0.86
Transmembrane Helix	212	234	0.82
Non-Cytoplasmic	235	239	0.70