YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CDS5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPFVEVCRY KPLPLSLSSL CTCPCRSSPR KYLILPQFSE KYPKPLLSHS RFTPISVNRR  60
   61 VITAVARAES NQIGDDANSK EEHNIDQELQ NVEEDSSLDD QKQKSRSQFK KRVTFGLGIG 120
  121 LSVGGIVLAG GWVFTVAVAA AVLLSAREYF ELVRSKGIAQ GMTPPPRYLS RVCSIICALM 180
  181 PILTLYFGHI DISITSAAFV VAMALLLQRG NPRFSQLSST MFGLFYCGYL PCFWVKLRCG 240
  241 LTAPVLNTGI GRSWPTILGG QAHWTVGLVA ILISFCGIIA SDTFAFLGGK AFGRTPLISI 300
  301 SPKKTWEGAF AGLVGCISIT ILLSKSLSWP QSLVSTIAFG VLNFFGSVFG DLTESMIKRD 360
  361 AGVKDSGSLI PGHGGILDRV DSYIFTGALA YSFVRLHGV

Type	Start	End	Confidence
Cytoplasmic	1	112	0.71
Transmembrane Helix	113	143	0.81
Non-Cytoplasmic	144	184	0.63
Transmembrane Helix	185	207	0.82
Cytoplasmic	208	216	0.75
Transmembrane Helix	217	237	0.80
Non-Cytoplasmic	238	263	0.81
Transmembrane Helix	264	286	0.93
Cytoplasmic	287	304	0.90
Transmembrane Helix	305	324	0.92
Non-Cytoplasmic	325	332	0.68
Transmembrane Helix	333	352	0.86
Cytoplasmic	353	399	0.85