YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HHP4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDEAEIKEH LKPQASSETM DKKHNVKGKR LWQKVKYQLV EFHSLPAYLR DNEYIIGHYR  60
   61 SEWPIKQILL SIFTIHNETL NVWTHLIGFF LFLALTIYTA TKVPSVVDLH SLQHRLPDLL 120
  121 RKTDLHKLHS ELMARLPSSP SSWHVMDLLY NCLPERFSHG NYTDMCVLHS VREDLANLIA 180
  181 PLIFRPITRW PFYAFLGGAM FCLLASSTCH LLSCHSERVS YIMLRLDYAG IAALIATSFY 240
  241 PPVYYSFMCD PFFCNLYLGF ITILGIATVL VSLLPVFQSP EFRVVRASLF FGMGFSGLAP 300
  301 ILHKLIIFWD QPEALHTTGY EILMGLLYGL GALVYATRIP ERWMPGKFDI AGHSHQLFHV 360
  361 LVVAGAFTHY RAGLVYLKWR DIEGC

Type	Start	End	Confidence
Cytoplasmic	1	80	0.92
Transmembrane Helix	81	101	0.86
Non-Cytoplasmic	102	191	0.97
Transmembrane Helix	192	214	0.91
Cytoplasmic	215	223	0.85
Transmembrane Helix	224	244	0.89
Non-Cytoplasmic	245	255	0.79
Transmembrane Helix	256	277	0.93
Cytoplasmic	278	286	0.81
Transmembrane Helix	287	307	0.93
Non-Cytoplasmic	308	316	0.85
Transmembrane Helix	317	337	0.91
Cytoplasmic	338	356	0.82
Transmembrane Helix	357	373	0.66
Non-Cytoplasmic	374	385	0.62