YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PT317_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.97
Transmembrane Helix	9	29	0.93
Non-Cytoplasmic	30	44	0.81
Transmembrane Helix	45	66	0.90
Cytoplasmic	67	75	0.86
Transmembrane Helix	76	97	0.91
Non-Cytoplasmic	98	105	0.76
Transmembrane Helix	106	127	0.91
Cytoplasmic	128	135	0.83
Transmembrane Helix	136	155	0.90
Non-Cytoplasmic	156	162	0.66
Transmembrane Helix	163	183	0.70
Cytoplasmic	184	192	0.69
Transmembrane Helix	193	214	0.89
Non-Cytoplasmic	215	227	0.75
Transmembrane Helix	228	249	0.92
Cytoplasmic	250	259	0.55
Transmembrane Helix	260	276	0.71
Non-Cytoplasmic	277	280	0.61
Transmembrane Helix	281	302	0.78
Cytoplasmic	303	375	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKMINKTLV LTYIYLLIYI ILSSGVILYN KWVLSPKYFN FPLPITLTMI HMGFAGFVAF  60
   61 LLIRVFKVVA PVKMTFEIYA TCVVPISAFF ASSLWFGNTA YLHISVAFIQ MLKALMPVAT 120
  121 FIMAVVCGTD KPRCDVFSNM LLVSVGVVIS SYGEIHFNIV GTVYQVTGIF AEALRLVLTQ 180
  181 VLLQKKGLTL NPITSLYYIA PCSFVFLALP WYVLEKPTME VSQIQFNFWI FFSNALCALA 240
  241 LNFSIFLVIG RTGAVTIRVA GVLKDWILIA LSTVIFPEST ITGLNITGYA IALCGVVMYN 300
  301 YIKVRDVKAS QPTADSLPDR INKEYKMEKK SSDKFNPNDS VEIPRVGGEV NDEEAPLITS 360
  361 RLSHIGRTQL GNHAA