YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11357625, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.64
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVLSSWLSV MFFSSVLRSS RLALPTQRRN AMITRAMSAS FGDMADDSAA IFPRINVKDP  60
   61 YKRLGISRMA SEDEIQGARN FLIQQYAGHK PSVDAIESAH DKIIMQKFHE RKNPKIDISK 120
  121 KVRQVRQSKV VNFVFERFQT PPNAVLVKTA VTFAVLGVLT VLFPTEEGPT LQVLLSLIAT 180
  181 FYFIHQRLQK KLWTFLYGAG AFIFSWLVGT FLMVSVIPPF IKGPRGFEVM SSLLSYVLLW 240
  241 VASSYLR

Type	Start	End	Confidence
Signal Peptide	1	23	0.60
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	167	0.61
Transmembrane Helix	168	185	0.73
Cytoplasmic	186	192	0.70
Transmembrane Helix	193	217	0.88
Non-Cytoplasmic	218	225	0.62
Transmembrane Helix	226	246	0.80
Cytoplasmic	247	247	0.78