YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7671495, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHSPDFHHH SKQSRTSSSN RKSSSSSCSS NFSVCCDGSR SAAIDVVILI AVITSSGFLI  60
   61 FPYIKFITIK SVEIFSELSC LVKEEILRNP DPIVYGLIAL SISCTALSAW MIVILLCSRH 120
  121 RCGKPNCKGL RKANAEFDIQ LETEDCVKSS NSGKSVSKKG LFELPRDHHR ELEAELKKMA 180
  181 PPNGRAVLVF RAKCGCSVGR LEVPGPKKQQ LQQRKFLNVF FDFLILFSGS HGLMVVIQTL 240
  241 VYALDSGVYV FLVYDLSFPW TWLESKEQWG LRDYYETLYV ILASKCMVKF KLKK

Type	Start	End	Confidence
Cytoplasmic	1	45	0.95
Transmembrane Helix	46	66	0.90
Non-Cytoplasmic	67	94	0.94
Transmembrane Helix	95	116	0.93
Cytoplasmic	117	215	0.98
Transmembrane Helix	216	237	0.83
Non-Cytoplasmic	238	240	0.48
Transmembrane Helix	241	263	0.52
Cytoplasmic	264	294	0.56