YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATL35_ARATH
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIFARDLIY RIETKVLLPL FLVHLLPYVT CQQESESVDR NRKTNFPTET VIAIIVLAIF  60
   61 ISLSMVACFL HKTFYRAEVE AASQEVFHSR ARRGLEKELV ESFPIFLYSE VKGLKIGKGG 120
  121 VECAICLSEF VDKETLRWMP PCSHTFHANC IDVWLSSQST CPACRANLSL KPGESYPYPI 180
  181 TDLETGNEQR DEHSLLQLGT NLDRFTLQLP EEMQRQLVSL NLIRTSNMTL PRAMSSRQGY 240
  241 RSGFSHGRQT LRRAISMSLS FSLQAASVRS TVGRDDLVLE TSQAKDKDLC EQSFQHLMPE 300
  301 KV

Type	Start	End	Confidence
Cytoplasmic	1	49	0.52
Transmembrane Helix	50	71	0.81
Non-Cytoplasmic	72	302	0.61