YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12323527, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	74	0.91
Transmembrane Helix	75	98	0.60
Non-Cytoplasmic	99	106	0.43
Transmembrane Helix	107	127	0.55
Cytoplasmic	128	128	0.27
Transmembrane Helix	129	148	0.61
Non-Cytoplasmic	149	149	0.31
Transmembrane Helix	150	168	0.80
Cytoplasmic	169	175	0.44
Transmembrane Helix	176	195	0.88
Non-Cytoplasmic	196	204	0.41
Transmembrane Helix	205	223	0.83
Cytoplasmic	224	275	0.61
Transmembrane Helix	276	306	0.53
Non-Cytoplasmic	307	308	0.26
Transmembrane Helix	309	329	0.55
Cytoplasmic	330	330	0.25
Transmembrane Helix	331	347	0.60
Non-Cytoplasmic	348	351	0.36
Transmembrane Helix	352	370	0.82
Cytoplasmic	371	377	0.56
Transmembrane Helix	378	397	0.88
Non-Cytoplasmic	398	408	0.57
Transmembrane Helix	409	431	0.89
Cytoplasmic	432	484	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLCLSSSR IVSLHHQKPF LSLKLRSRPS DLSGLGRHTS PVCFNPLRLS GDRQRTATVS  60
   61 TRVEKRRKRG SSVVCYAAPI SANSLQWIST ISCLALMLAR GTGIHKSVVV PLFALHAPSS 120
  121 IVAWIKGEYG VWAAFLALIA RLFFTFPGEL ELPFIALLLV IVAPYQVMNI RGKQEGAIIA 180
  181 IAISGFLAFQ HFSRAGSLEK AYEKGSVLAT VAIIGVTVKP FLALKLRPRP SNISGLGHST 240
  241 SVVCFNPLRL SADRQRTATV SARAEKRRKR GSSVVCYATP MLSVHNLQWI STISCVALMF 300
  301 ARGTGIHKSF VVPLFALQAP MGIVSWMKGE YGIWAAFLAL LTRLFFSFPV ELELPFIALL 360
  361 LVIVAPYQVM SIRGKQEGAI LSLAISCFLA FQHFSRAGTL QKAFDQNSVL ATVAIIGVTV 420
  421 VSWSLSVIFG VPTCFRVLQV AEFGSPVGSA TPKGGPEPVM PVVGVVIGGG YVDDGGELKS 480
  481 GGLI