YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAAT6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	62	0.81
Transmembrane Helix	63	84	0.90
Non-Cytoplasmic	85	94	0.64
Transmembrane Helix	95	117	0.86
Cytoplasmic	118	126	0.58
Transmembrane Helix	127	148	0.69
Non-Cytoplasmic	149	189	0.66
Transmembrane Helix	190	209	0.88
Cytoplasmic	210	216	0.85
Transmembrane Helix	217	236	0.94
Non-Cytoplasmic	237	254	0.89
Transmembrane Helix	255	275	0.94
Cytoplasmic	276	295	0.86
Transmembrane Helix	296	319	0.86
Non-Cytoplasmic	320	346	0.91
Transmembrane Helix	347	371	0.86
Cytoplasmic	372	391	0.90
Transmembrane Helix	392	411	0.92
Non-Cytoplasmic	412	416	0.77
Transmembrane Helix	417	438	0.90
Cytoplasmic	439	449	0.83
Transmembrane Helix	450	472	0.90
Non-Cytoplasmic	473	479	0.85
Transmembrane Helix	480	501	0.94
Cytoplasmic	502	508	0.91
Transmembrane Helix	509	530	0.91
Non-Cytoplasmic	531	537	0.74
Transmembrane Helix	538	559	0.88
Cytoplasmic	560	583	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVQSSSNNG GHSSFSSLRV YLNSLSATPS RLSRRAISVS TSSDEMSRVR AVSGEQMRRT  60
   61 LRWYDLIGLG IGGMVGAGVF VTTGRASRLD AGPSIVVSYA IAGLCALLSA FCYTEFAVHL 120
  121 PVAGGAFSYI RITFGEFPAF FTGANLVMDY VMSNAAVSRS FTAYLGTAFG ISTSKWRFVV 180
  181 SGLPKGFNEI DPVAVLVVLV ITVIICCSTR ESSKVNMIMT AFHIAFIFFV IVMGFIKGDS 240
  241 KNLSSPANPE HPSGFFPFGA AGVFNGAAMV YLSYIGYDAV STMAEEVENP VKDIPVGVSG 300
  301 SVAIVTVLYC LMAVSMSMLL PYDLIDPEAP FSAAFRGSNG WEWVTKVVGI GASFGILTSL 360
  361 LVAMLGQARY MCVIGRSRVV PFWFAKIHPK TSTPVNASTF LGIFTAALAL FTDLNVLLNL 420
  421 VSIGTLFVFY MVANALIFRR YVPVGPTKPW PTLCFLTLFS ITSLVFTLIW KLVPEGKPKA 480
  481 FMLGASAVVA IAIVLSFQCV VPQARKPELW GVPFMPWTPC VSIFLNIFLL GSLDAPSYVR 540
  541 FGFFSGLIVL VYLFYGVHAS SDAEANGSFG VKDGQVMKEL IEV