YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	B561I_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.86
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTLVGFYIL CFLIGQDLPF LAADDVNVIN DSTQNLCFAN RLSDFLPPPY SNISDNMPCT  60
   61 PLWNTFVLRY SENRDNVMTI IVSALYTTGW VGIGFSKEGR MVGSSAMIGW ISKKGHAKIK 120
  121 QYYLQGTERD QVVPDQGELQ LQKVPPVVAL HGAMIYLAFQ VKFAVRVPRR AVILAFSTAY 180
  181 PSKLGRLTKH DDKTTVIVDF SKASGATSIK TTTSTEKTKH GVMAILGWGF LLPVGAILAR 240
  241 YLRHKDPLWY YLHIGFQFTG FIFGLAAVIL GIQLYNRIQP DIPAHRGIGI FLLVLSTLQV 300
  301 LAFFARPQKE TKMRRYWNWY HHWIGRISLF FGAVNIVLGI RMADNGGDGW KIGYGFVLSV 360
  361 TLLAFVVLEI FRIRGTIGSP SSRSPPSFET HPSSSTSV

Type	Start	End	Confidence
Signal Peptide	1	22	0.86
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	220	0.96
Transmembrane Helix	221	242	0.91
Cytoplasmic	243	249	0.88
Transmembrane Helix	250	272	0.91
Non-Cytoplasmic	273	283	0.79
Transmembrane Helix	284	305	0.91
Cytoplasmic	306	321	0.92
Transmembrane Helix	322	343	0.91
Non-Cytoplasmic	344	351	0.86
Transmembrane Helix	352	373	0.92
Cytoplasmic	374	398	0.97