YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15234213, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQVITRIKD PIEKERDNSH RHREMAREKK TCVECGHKVK SLFIQYSPGN FRLMKCENCE  60
   61 EVADEYVECE LLIIFIDLIL HKTKAYRHLL YNVVNQESAN VQHLLWKLVL AYLLLDTYRS 120
  121 LLLRRTNDGS NVSMSFLFES LEVLVNVLSA NFAFVFSFAF AAKLMLVMPR GKEILLTILI 180
  181 SSYVKIFLFA MPVWEFPVSV IFIVDMLVLT SNAVALKVMT ESATSRCLAV CFIAHSIRFL 240
  241 VDQISGHLGS VM

Type	Start	End	Confidence
Non-Cytoplasmic	1	142	0.64
Transmembrane Helix	143	166	0.85
Cytoplasmic	167	173	0.72
Transmembrane Helix	174	193	0.76
Non-Cytoplasmic	194	197	0.58
Transmembrane Helix	198	216	0.77
Cytoplasmic	217	252	0.45