YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18409754, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAEKKWLFT LFSVVFLSVF LLLLYSISAF TSKPFPSSIR HGAHYPPAFA YYITGGRGDN  60
   61 DRISRLLLAV YHPRNRYLIH LGAEATDAER LALLSDLKSV PAVNAFGNVD VLGKVDRLSE 120
  121 NGASKIASTL HAVSILLKLD PTWNWFIELS ALDYPLITQD DLSHVFASVN RSLNFIDHTS 180
  181 DLAWKESQRI KPIVVDPALY LARRTQLFTA TEKRPTPDAF KVFTGSPWIV LSRPFLEYCI 240
  241 FGWDNLPRIL LMYFNNVILS EECYFHTVIC NAPEFSNTTV NGDLRYMIWD SPPKMEPHFL 300
  301 TISDFDQMAQ SGAAFARQFK KDDPVLDMVD REILKRGRYR VTPGAWCSSH SSWWTDPCSE 360
  361 WDEVNIVKAG PQAKKLDETI TNFLDDLNSQ SNQCK

Type	Start	End	Confidence
Signal Peptide	1	29	0.68
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	395	0.99