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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|11358123, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNPSSSGLG SSSGLTHFGI GLANTVQSEV TPYLPLPSLP IFCGAAEPGE FKLFDEVGQG  60
   61 SGYRSLDRSE ILAQSSRIAN MLHETDVSYL DLRNEARAPD CNSGEHFQLY DLVLRCNPGA 120
  121 FEYVTPGPTC DPLFTNEGPQ KIISEPSVPV KMQRQTDTHL ARSIEPEPVK RVLRPNHVED 180
  181 HSWQHETLTN QSPKDVTAYD SRPETITMNE LSASKKPKGK KKRKDDLSSV QPDPSVLQES 240
  241 IVQNFCEMLE DFCGRAEVPG DDRDEAEWSS VPVDEVRVLI NELMTIRSKM LLHMVPVDIL 300
  301 SRLLRTLDHQ IHRAEGLSIY SEHSDSDSVL LVLGALESIH ASLAVMANSD MPKQLYKEEI 360
  361 IERILEFSRH QMMAVMSAYD PSYRTGSKPA ENLAFEGDDD DDNPDHDMGS ASKRRRIVKN 420
  421 SKVKKASVNS KYCTTETLHY SWLTQGPVVG RKLPSSKRAL RAYLLPDEEQ RQIQMVTALL 480
  481 IQLVHNSTSL PETSRQAASG NSILETSVDV GYLTKCHEAA TETCCLFWTR VLERFTSFKG 540
  541 QDASEIKLII ENLVMDLLTA LNLPEYPSVS PILEVLCVIL LHNAGLKSKD VSARIMAIEL 600
  601 LGTIAARLKR DAVLCSKDRF WTLLESDSEI SVDQELDISS RNWHCPLCVC KRQLLVLQSY 660
  661 CKTDTKGTGK LESEESIENP SMITKTEVVQ QMLLNYLQDV GSADDVHTFI CWFYLCLWYK 720
  721 DVPKSQNKFK YYIARLKAKS IIRNSGATTS FLTRDAIKQI TLALGMNSSF SRGFDKILNM 780
  781 LLASLRENAP NIRAKALRAV SIIVEADPEV LCDKRVQLAV EGRFCDSAIS VREAALELVG 840
  841 RHIASHPDVG IKYFEKVAER IKDTGVSVRK RAIKIIRDMC TSNPNFSEFT SACAEILSRI 900
  901 SDDESSVQDL VCKTFYEFWF EEPPGHHTQF ASDASSIPLE LEKKTKQMVG LLSRTPNQQL 960
  961 LVTIIKRALA LDFFPQAAKA AGINPVALAS VRRRCELMCK CLLEKILQVE EMSREEGEVQ1020
 1021 VLPYVLVLHA FCLVDPGLCT PASDPTKFVI TLQPYLKSQA DSRTGAQLLE SIIFIIDSVL1080
 1081 PLIRKLPLSV TEDLEQDLKH MIVRHSFLTV VHACVSKLAG KGVSIVEHLL QFFFKRLEAQ1140
 1141 GSDNTQIAGR SLFCLGLLIR HGNSLISTSG GKNFNLSGCL NLFKRHLRTE DIALKVRSLQ1200
 1201 ALGFILIARP EYMLEEDIGK IIETTLADEA NGRMKMQALQ NMYEYLLDAE KQLGSEKASD1260
 1261 NTVNSVEQGG HNVPVAAGAG DTNICGGIVQ LFWDKILGRC LDFDDQIRQT SLKIVEVVLR1320
 1321 QGLVHPITCV PYLIALETDP QEANQKLAHH LLMNMHEKYP AFFESRLGDG LQMSFIFMQS1380
 1381 ISQVTSEPNQ SLQQKGSTNM LGKNDHASST LTQARLGVSR IYKLIRGNRV SRNKFMTSIV1440
 1441 RKFDNPTWNG SVISFLKYCT ETLALLPFTS PDEPLYLVYS INRVMQIRAG AVESNLKALL1500
 1501 HKDSAKTQHG NGAYQQDPIP GHMNMMDLNT RIQEEPRHWN SYGHATLIDL NGSVYQDSRD1560
 1561 QFTSYQVHNG KADVHKMTSS DPPELSTDDL QKIQVVFMAF SPVMLRVDCL AAIAIQLLLK1620
 1621 LKRYLKVTYS LNDDRCQAYS PTEPLKPGDP LSRQSVAFDL SETRTDLPST YQDLVQRYQE1680
 1681 FKNAMREDTV DFTIYSTNVK RKRPTPRKTS RSAKKTVAYN EDDDDDDNDD RGWHGGGGRG1740
 1741 AARRLNYSTR SSNRR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle