YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GTG1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYGWAIYEG TVVIASLSLL GWAGLWFLNR RLYKEYEEKR ALVQIIFSVV FAFSCNLLQL  60
   61 VLFEIIPVLS REARMINWKV DLFCLILLLV FMLPYYHCYL MLRNSGVRRE RASVGAFLFL 120
  121 SAFLYAFWRM GVHFPMPSAD KGFFTMPQLV SRIGVIGVTL MAVLSGFGAV NLPYSYISLF 180
  181 IREIEEADII SLERQLIQST ETCIAKKKKI ILCQLEVERN QGSEENQKRS SFFRRIVGTV 240
  241 VRSVQDDQKE QDIKILEAEV EALEELSKQL FLEVYELRQA KDAAAYSRTW KGHVQNLLGY 300
  301 ACSIYCVYKM LKSLQSVVFK EAGTKDPVTT MISIFLRLFD IGVDAALLSQ YISLLFIGML 360
  361 IVISVRGFLT NLMKFFFAVS RVGSGSSSNV VLFLSEIMGM YFLSSILLIR KSLRNEYRGI 420
  421 ITDVLGGDIQ FDFYHRWFDA IFVASAFLSL VLLSAHYTSR QSDKHAIE

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.89
Transmembrane Helix	7	28	0.93
Cytoplasmic	29	40	0.93
Transmembrane Helix	41	63	0.90
Non-Cytoplasmic	64	78	0.84
Transmembrane Helix	79	100	0.89
Cytoplasmic	101	111	0.89
Transmembrane Helix	112	132	0.89
Non-Cytoplasmic	133	152	0.88
Transmembrane Helix	153	174	0.92
Cytoplasmic	175	346	0.91
Transmembrane Helix	347	370	0.85
Non-Cytoplasmic	371	389	0.54
Transmembrane Helix	390	409	0.84
Cytoplasmic	410	436	0.53
Transmembrane Helix	437	458	0.85
Non-Cytoplasmic	459	468	0.49