YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7635452, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLSRNNDIM IPAPRSGDYR NFLDLLSPYP LFTELIHVPS IIFSDTFNTL KTLKPMSFYH  60
   61 LSGLNRRQTL YGFLNLHGRE LHVGENPPVL LRFITRHLRI LVFASSNGLS LPNDYLSSSS 120
  121 LEDFKPFTLY TTSIRYGLPK LQSHLTAALP LNLTHRSTVF ARALVKALPR VVCLVPPSFT 180
  181 SLTLTPTPLR LLTMTNCSSF DLLLEDLSIS FDLTCTNKLP SFWFKALKDL ISINPIYPFM 240
  241 FLMLSYLMFS LGYALYCDVL NFGNSFPLHL CIWFPW

Type	Start	End	Confidence
Cytoplasmic	1	235	0.82
Transmembrane Helix	236	257	0.85
Non-Cytoplasmic	258	276	0.76