YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22330308, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIWSLLKIYV LMLCTISTVY NTFLLIVCVV GCCVQMEEIV FETKDAVDWS YRSEGVVNLV  60
   61 LAYSGSSPTF LGKVMRIKKL RNTRNENRDR SGSCLTTQEK LIWGEIKDLV SCQNKEIVDY 120
  121 LFVKHVMKPL LGHKYVTPGI CLPVEKEFLE SVKKIVTSQR HSWRANTLSV DTNRSFALLM 180
  181 DDLTIFSHGQ VEDHKPCLTV EIKPKCGFLS SSSFIAEENV IKKSISRFEM YQVLKLRENQ 240
  241 ISQISEYDPL DLFSGSKDRI HKAIKALYST PQNSLQVFLN GSLVFGGFRG GICKTTSKLE 300
  301 LAFEHTLKDF FKTEDDCGLR ANAFIELVAE TVYASGALDQ LLEVQKLDKY NIEGAIHAYY 360
  361 DLVDQPCKAC QELESSKLSN QFGSMHSLPQ DEKVNILKDF LISSTAIDCS VMISFRPIET 420
  421 GLSRSSSHGN IQLESTKQEF EYKIHFIDLD MRPLKRMEAY HESDKKITKT YQEMLKKKKG 480
  481 DQPRRF

Type	Start	End	Confidence
Cytoplasmic	1	8	0.63
Transmembrane Helix	9	31	0.66
Non-Cytoplasmic	32	486	0.84