YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	WTR13_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.91
Transmembrane Helix	16	37	0.87
Non-Cytoplasmic	38	46	0.84
Transmembrane Helix	47	65	0.96
Cytoplasmic	66	75	0.82
Transmembrane Helix	76	91	0.96
Non-Cytoplasmic	92	105	0.72
Transmembrane Helix	106	128	0.90
Cytoplasmic	129	141	0.83
Transmembrane Helix	142	163	0.87
Non-Cytoplasmic	164	183	0.94
Transmembrane Helix	184	207	0.88
Cytoplasmic	208	216	0.83
Transmembrane Helix	217	237	0.93
Non-Cytoplasmic	238	253	0.89
Transmembrane Helix	254	272	0.96
Cytoplasmic	273	280	0.80
Transmembrane Helix	281	302	0.94
Non-Cytoplasmic	303	306	0.85
Transmembrane Helix	307	326	0.93
Cytoplasmic	327	380	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEVKKRDCM EKARPFISMV VLQVGLAGMD ILSKAVLNKG MSNYVLVVYR HAVATIVMAP  60
   61 FAFYFDKKVR PKMTLMIFFK ISLLGLLEPV IDQNLYYLGM KYTTATFATA MYNVLPAITF 120
  121 VLAYIFGLER VKLRCIRSTG KVVGTLATVG GAMIMTLVKG PVLDLFWTKG VSAHNTAGTD 180
  181 IHSAIKGAVL VTIGCFSYAC FMILQAITLR TYPAELSLTA WICLMGTIEG TAVALVMEKG 240
  241 NPSAWAIGWD TKLLTATYSG IVCSALAYYV GGVVMKTRGP VFVTAFSPLC MIIVAIMSTI 300
  301 IFAEQMYLGR VLGAVVICAG LYLVIWGKGK DYKYNSTLQL DDESAQPKLE LSGNGKDNVD 360
  361 HEVITISKQG EQRRTAVETV